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REVIEW PAPERS

• Nishiyama, Y. (2020) Resilience under climate change. Nat. Plants, 6: 442-443.
• Murata, N. and Nishiyama, Y. (2018) ATP is a driving force in the repair of photosystem II during photoinhibition. Plant Cell Environ., 41: 285-299.
• Nishiyama, Y. and Murata, N. (2014) Revised scheme for the mechanism of photoinhibition and its application to enhance the abiotic stress tolerance of the photosynthetic machinery. Appl. Microbiol. Biotechnol., 98(21): 8777-8796.
• Murata, N., Allakhverdiev, S.I. and Nishiyama, Y. (2012) The mechanism of photoinhibition in vivo: re-evaluation of the roles of catalase, arpha-tocopherol, non-photochemical quenching, and electron transport. Biochim. Biophys. Acta, 1817: 1127-1133.
• Nishiyama, Y., Allakhverdiev, S.I. and Murata, N. (2011) Protein synthesis is the primary target of reactive oxygen species in the photoinhibition of photosystem II. Physiol. Plant., 142: 35-46.
• Nishiyama, Y. and Hisabori, T. (2009) Physiological impact of thioredoxin- and glutaredoxin-mediated redox regulation in cyanobacteria. In Advances in Botanical Research (Jean-Pierre Jacquot, ed), Elsevier, 52: 187-205.
• Murata, N., Takahashi, S., Nishiyama, Y. and Allakhverdiev, S.I. (2007) Photoinhibition of photosystem II under environmental stress. Biochim. Biophys. Acta, 1767: 414-421.
• Nishiyama, Y., Allakhverdiev, S.I. and Murata, N. (2006) A new paradigm for the action of reactive oxygen species in the photoinhibition of photosystem II. Biochim. Biophys. Acta, 1757: 742-749.
• Nishiyama, Y., Allakhverdiev, S.I. and Murata, N. (2006) Regulation by environmental conditions of the repair of photosystem II in cyanobacteria. In Advances in Photosynthesis and Respiration: Photoprotection, Photoinhibition, Gene Regulation and Environment (B. Demmig-Adams et al. eds), pp. 193-203, Springer, The Netherlands.
• Nishiyama, Y., Allakhverdiev, S.I. and Murata, N. (2005) Inhibition of the repair of photosystem II by oxidative stress in cyanobacteria. Photosynth. Res., 84(1-3): 1-7.
• Murata, N. and Nishiyama, Y. (1998) Molecular mechanisms of the low-temperature tolerance of the photosynthetic machinery. In Stress Responses of Photosynthetic Organisms, pp. 93-112. Elsevier Science B.V., Amsterdam.

ORIGINAL PAPERS

• Suka, A., Shikata, T., Yuasa, K., Tomaru, Y., Napaumpaiporn, P., Tanaka, R. and Nishiyama, Y. (2024) The toxigenic red-tide-forming dinoflagellates Alexandrium leei and Alexandrium catenella differ in terms of the sensitivity to strong light and low temperature of their photosynthetic machinery. Algal Res., 79: 103495.
• Songserm, R., Nishiyama, Y. and Sanevas, N. (2024) Light influences the growth, pigment synthesis, photosynthesis capacity, and antioxidant activities in Scenedesmus falcatus. Scientifica, 1898624.
• Napaumpaiporn, P., Ogawa, T., Sonoike, K. and Nishiyama, Y. (2024) Improved capacity for the repair of photosystem II via reinforcement of the translational and antioxidation systems in Synechocystis sp. PCC 6803. Plant J., 117(4): 1165-1178.
• Toriu, M., Horie, M., Kumaki, Y., Yoneyama, T., Kore-eda, S., Mitsuyama, S., Yoshida, K., Hisabori, T. and Nishiyama, Y. (2023) Chloroplast translation factor EF-Tu of Arabidopsis thaliana can be inactivated via oxidation of a specific cysteine residue. Biochem. J., 480(5): 307-318.
• Sakamoto, T., Wei, Y., Yuasa, K. and Nishiyama, Y. (2022) Recovery of photosynthesis after long-term storage in the terrestrial cyanobacterium Nostoc commune. J. Gen. Appl. Microbiol., 68(4): 169-174.
• Shikata,T., Yuasa, K., Kitatsuji, S., Sakamoto, S., Akita, K., Fujinami, Y., Nishiyama, Y., Kotake, T., Tanaka, R. and Yamasaki, Y. (2021) Superoxide production by the red tide-producing Chattonella marina complex (Raphidophyceae) correlates with toxicity to aquacultured fishes. Antioxidants, 10: 1635.
• Sakamoto, T., Takatani, N., Sonoike, K., Jimbo, H., Nishiyama, Y. and Omata, T. (2021) Dissection of the mechanisms of growth inhibition resulting from loss of the PII protein in the cyanobacterium Synechococcus elongatus PCC 7942. Plant Cell Physiol., 62(4): 721-731.
• Ishikawa, Y., Cassan, C., Kadeer, A., Yuasa, K., Sato, N., Sonoike, K., Kaneko, Y., Miyagi, A., Takahashi, H., Ishikawa, T., Yamaguchi, M., Nishiyama, Y., Hihara, Y., Gibon, Y. and Kawai-Yamada, M. (2021) The NAD kinase Slr0400 functions as a growth repressor in Synechocystis sp. PCC 6803. Plant Cell Physiol., 62(4): 668-677.
• Yuasa, K., Shikata, T., Ichikawa, T., Tamura, Y. and Nishiyama, Y. (2020) Nutrient deficiency stimulates the production of superoxide in the noxious red-tide-forming raphidophyte Chattonella antiqua. Harmful Algae, 99: 101938.
• Jimbo, H., Takagi, K., Hirashima, T., Nishiyama, Y. and Wada, H. (2020) Long-chain saturated fatty acids, palmitic and stearic acids, enhance the repair of photosystem II. Intl. J. Mol. Sci., 21(20): 7509.
• Shikata, T., Kitatsuji, S., Abe, K., Onitsuka, G., Matsubara, T., Nakayama, N., Yuasa, K., Nishiyama, Y., Mizuno, K., Masuda, T. and Nagai, K. (2020) Vertical distribution of a harmful red-tide dinoflagellate, Karenia mikimotoi, at the decline stage of blooms. J. Sea Res., 165: 101960.
• Izuhara, T., Kaihatsu, I., Jimbo, H., Takaichi, S. and Nishiyama, Y. (2020) Elevated levels of specific carotenoids during acclimation to strong light protect the repair of photosystem II in Synechocystis sp. PCC 6803. Front. Plant Sci., 11: 1030.
• Yuasa, K., Shikata, T., Kitatsuji, S., Yamasaki, Y. and Nishiyama, Y. (2020) Extracellular secretion of superoxide is regulated by photosynthetic electron transport in the noxious red-tide-forming raphidophyte Chattonella antiqua. J. Photochem. Photobiol. B: Biol., 205: 111839.
• Jimbo, H., Izuhara, T., Hihara, Y., Hisabori, T. and Nishiyama, Y. (2019) Light-inducible expression of translation factor EF-Tu during acclimation to strong light enhances the repair of photosystem II. Proc. Natl. Acad. Sci. U.S.A., 116(42): 21268-21273.
• Shikata, T., Takahashi, F., Nishide, H., Shigenobu, S., Kamei, Y., Sakamoto, S., Yuasa, K., Nishiyama, Y., Yamasaki, Y. and Uchiyama, I. (2019) RNA-seq analysis reveals genes related to photoreception, nutrient uptake, and toxicity in a noxious red-tide raphidophyte Chattonella antiqua. Front. Microbiol., 10: 1764.
• Takahashi, H., Kusama, Y., Li, X., Takaichi, S. and Nishiyama, Y. (2019) Overexpression of orange carotenoid protein protects the repair of photosystem II under strong light in Synechocystis sp. PCC 6803. Plant Cell Physiol., 60(2): 365-375.
• Kujirai, J., Nanba, S., Kadowaki, T., Oka, Y., Nishiyama, Y., Hayashi, Y., Arai, M. and Hihara, Y. (2018) Interaction of the GntR-family transcription factor Sll1961 with thioredoxin in the cyanobacterium Synechocystis sp. PCC 6803. Sci. Rep., 8: 6666.
• Jimbo, H., Yutthanasirikul, R., Nagano, T., Hisabori, T., Hihara, Y. and Nishiyama, Y. (2018) Oxidation of translation factor EF-Tu inhibits the repair of photosystem II. Plant Physiol., 176(4): 2691-2699.
• Yuasa, K., Shikata, T., Kuwahara, Y. and Nishiyama, Y. (2018) Adverse effects of strong light and nitrogen deficiency cell viability, photosynthesis, and motility of the red-tide dinoflagellate Karenia mikimotoi. Phycologia, 57(5): 525-533.
• Kizawa, A., Kawahara, A., Takashima, K., Takimura, Y., Nishiyama, Y. and Hihara, Y. (2017) The LexA transcription factor regulates fatty acid biosynthetic genes in the cyanobacterium Synechocystis sp. PCC 6803. Plant J., 92(2): 189-198.
• Sato, N., Ebiya, Y., Kobayashi, R., Nishiyama, Y. and Tsuzuki, M. (2017) Disturbance of cell-size determination by forced overproduction of sulfoquinovosyl diacylglycerol in the cyanobacterium Synechococcus elongatus PCC 7942. Biochem. Biophys. Res. Commun., 487(3): 734-739.
• Ueno, M., Sae-Tang, P., Kusama, Y., Hihara, Y., Matsuda, M., Hasunuma, T. and Nishiyama, Y. (2016) Moderate heat stress stimulates repair of photosystem II during photoinhibition in Synechocystis sp. PCC 6803. Plant Cell Physiol., 57(11): 2417-2426.
• Sae-Tang, P., Hihara, Y., Yumoto, I., Orikasa, Y., Okuyama, H. and Nishiyama, Y. (2016) Overexpressed superoxide dismutase and catalase act synergistically to protect the repair of PSII during photoinhibition in Synechococcus elongatus PCC 7942. Plant Cell Physiol., 57(9): 1899-1907.
• Shikata, T., Matsunaga, S., Kuwahara, Y., Iwahori, S. and Nishiyama, Y. (2016) Light spectrum regulates cell accumulation during daytime in the raphidophyte Chattonella antiqua causing noxious red tides. J. Photochem. Photobiol. B Biol., 160: 128-133.
• Kizawa, A., Kawahara, A., Takimura, Y., Nishiyama, Y. and Hihara, Y. (2016) RNA-seq profiling reveals novel target genes of LexA in the cyanobacterium Synechocystis sp. PCC 6803. Front. Microbiol., 7: 193.
• Kadowaki, T., Nagayama, R., Georg, J., Nishiyama, Y., Wilde, A., Hess, W. and Hihara, Y. (2016) A feed-forward loop consisting of the response regulator RpaB and the small RNA PsrR1 controls light acclimation of photosystem I gene expression in the cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol., 57(4): 813-823.
• Yutthanasirikul, R., Nagano, T., Jimbo, H., Hihara, Y., Kanamori, T., Ueda, T., Haruyama, T., Konno, H., Yoshida, K., Hisabori, T. and Nishiyama, Y. (2016) Oxidation of a cysteine residue in elongation factor EF-Tu reversibly inhibits translation in the cyanobacterium Synechocystis sp. PCC 6803. J. Biol. Chem., 291(11): 5860-5870.
• Saito, S., Hirose, K., Tsuchida, M., Wakui, K., Yoshimoto, K., Nishiyama, Y. and Shibukawa, M. (2016) Rapid acquisition of high-affinity DNA aptamer motifs recognizing microbial cell surfaces using polymer-enhanced capillary transient isotachophoresis. Chem. Commun., 52(3): 461-464.
• Nishijima, Y., Kanesaki, Y., Yoshikawa, H., Ogawa, T., Sonoike, K., Nishiyama, Y. and Hihara, Y. (2015) Analysis of spontaneous suppressor mutants from the photomixotrophically-grown pmgA-disrupted mutant in the cyanobacterium Synechocystis sp. PCC 6803. Photosynth. Res., 126(2-3): 465-475.
• Nagano, T., Yutthanasirikul, R., Hihara, Y., Hisabori, T., Kanamori, T., Takeuchi, N., Ueda, T. and Nishiyama, Y. (2015) Oxidation of translation factor EF-G transiently retards the translational elongation cycle in Escherichia coli. J. Biochem., 158(2): 165-172.
• Kusama, Y., Inoue, S., Jimbo, H., Takaichi, S., Sonoike, K., Hihara, Y. and Nishiyama, Y. (2015) Zeaxanthin and echinenone protect the repair of photosystem II from inhibition by singlet oxygen in Synechocystis sp. PCC 6803. Plant Cell Physiol., 56(5): 906-916.
• Kadowaki, T., Nishiyama, Y., Hisabori, T. and Hihara, Y. (2015) Identification of OmpR-family response regulators interacting with thioredoxin in the cyanobacterium Synechocystis sp. PCC 6803. PLoS One, 10(3): e0119107.
• Hanai, M., Sato, Y., Miyagi, A., Kawai-Yamada, M., Tanaka, K., Kaneko, Y., Nishiyama, Y. and Hihara, Y. (2014) The effects of dark incubation on cellular metabolism of the wild type and the mutant lacking the transcriptional regulator cyAbrB2 in the cyanobacterium Synechocystis sp. PCC 6803. Life, 4(4): 770-787.
• Kaniya, Y., Kizawa, A., Miyagi, A., Kawai-Yamada, M., Uchimiya, H., Kaneko, Y., Nishiyama, Y. and Hihara, Y. (2013) Deletion of the transcriptional regulator cyAbrB2 de-regulates primary carbon metabolism in Synechocystis sp. PCC 6803. Plant Physiol., 162(2): 1153-1163.
• Kore-eda, S., Nozawa, A., Okada, Y., Takashi, K., Azad, M.A.K., Ohnishi, J., Nishiyama, Y. and Tozawa, Y. (2013) Characterization of the plastidic phosphate translocators in the inducible crassulacean acid metabolism plant Mesembryanthemum crystallinum. Biosci. Biotech. Biochem., 77(7): 1511-1516.
• Jimbo, H., Noda, A., Hayashi, H., Nagano, T., Yumoto, I., Orikasa, Y., Okuyama, H. and Nishiyama, Y. (2013) Expression of a highly active catalase VktA in the cyanobacterium Synechococcus elongatus PCC 7942 alleviates the photoinhibition of photosystem II. Photosynth. Res., 117: 509-515.
• Nagano, T., Kojima, K., Hisabori, T., Hayashi, H., Morita, E.H., Kanamori, T., Miyagi, T., Ueda, T. and Nishiyama, Y. (2012) Elongation factor G is a critical target during oxidative damage to the translation system of Escherichia coli. J. Biol. Chem., 287(34): 28697-28704.
• Morita, E.H., Kawamoto, S., Abe, S., Nishiyama, Y., Ikegami, T. and Hayashi, H. (2012) Comparative study of the different mechanisms for zinc ion stress sensing in two cyanobacterial strains, Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803. Biophysics, 8: 103-109.
• Ejima, K., Kawaharada, T., Inoue, S., Kojima, K. and Nishiyama, Y. (2012) A change in the sensitivity of elongation factor G to oxidation protects photosystem II from photoinhibition in Synechocystis sp. PCC 6803. FEBS Lett., 586(6): 778-783.
• Inoue, S., Ejima, K., Iwai, E., Hayashi, H., Appel, J., Tyystjärvi, E., Murata, N. and Nishiyama, Y. (2011) Protection by alpha-tocopherol of the repair of photosystem II during photoinhibition in Synechocystis sp. PCC 6803. Biochim. Biophys. Acta, 1807: 236-241.
• Horiuchi, M., Nakamura, K., Kojima, K., Nishiyama, Y., Hatakeyama, W., Hisabori, T. and Hihara, Y. (2010) The PedR transcription factor interacts with thioredoxin to link photosynthesis with gene expression. Biochem. J., 431(1): 135-140.
• Nanjo, Y., Mizusawa, N., Wada, H., Slabas, A.R., Hayashi, H. and Nishiyama, Y. (2010) Synthesis of fatty acids de novo is required for photosynthetic acclimation of Synechocystis sp. PCC 6803 to high temperature. Biochim. Biophys. Acta, 1797: 1483-1490.
• Rowland, J.G., Simon, W.J., Nishiyama, Y. and Slabas, A.R. (2010) Differential proteomic analysis using iTRAQ reveals changes in thylakoids associated with Photosystem II acquired thermotolerance in Synechocystis sp. PCC 6803. Proteomics, 10: 1917-1929.
• Kojima, K., Motohashi, K., Morota, T., Oshita, M., Hisabori, T., Hayashi, H. and Nishiyama, Y. (2009) Regulation of translation by the redox state of elongation factor G in the cyanobacterium Synechocystis sp. PCC 6803. J. Biol. Chem., 284 (28): 18685-18691.
• Allakhverdiev, S.I., Los, D.A., Mohanty, P., Nishiyama, Y. and Murata, N. (2007) Glycinebetaine alleviates the inhibitory effect of moderate heat stress on the repair of photosystem II during photoinhibition. Biochim. Biophys. Acta, 1767: 1363-1371.
• Kojima, K., Oshita, M., Nanjo, Y., Kasai, K., Tozawa, Y., Hayashi, H. and Nishiyama, Y. (2007) Oxidation of elongation factor G inhibits the synthesis of the D1 protein of photosystem II. Mol. Microbiol., 65(4): 936-947.
• Tozawa, Y., Teraishi, M., Sasaki, T., Sonoike, K., Nishiyama, Y., Itaya, M., Miyao, A. and Hirochika, H. (2007) The plastid sigma factor SIG1 maintains photosystem I activity via regulated expression of the psaA operon in rice chloroplasts. Plant J., 52(1): 124-132.
• Nishiyama, Y., Takechi, K., Nanjo, Y., Murata, N. and Hayashi, H. (2006) Acclimation of photosystem II to high temperature in a suspension culture of soybean (Glycine max) cells requires proteins that are associated with the thylakoid membrane. Photosynth. Res., 90: 223-232.
• Zsiros, O., Allakhverdiev, S.I., Higashi, S, Watanabe, M., Nishiyama, Y. and Murata, N. (2006) Very strong UV-A light temporally separates the photoinhibition of photosystem II into light-induced inactivation and repair. Biochim. Biophys. Acta, 1757: 123-129.
• Yamauchi, S., Okuyama, H., Nishiyama, Y. and Hayashi, H. (2006) The rpoH gene encoding heat shock factor 32 of psychrophilic bacterium Colwellia maris. Extremophiles, 10(2): 149-158.
• Okuda, K., Hayashi, H. and Nishiyama, Y. (2005) Systematic characterization of the ADP-ribose pyrophosphatase family in the cyanobacterium Synechocystis sp. strain PCC 6803. J. Bacteriol., 187(14): 4984-4991.
• Ohnishi, N., Allakhverdiev, S.I., Takahashi, S., Higashi, S., Watanabe, M., Nishiyama, Y. and Murata, N. (2005) The two-step mechanism of photodamage to photosystem II: Step one occurs at the oxygen-evolving complex and step two occurs at the photochemical reaction center. Biochemistry, 44(23): 8494-8499.
• Allakhverdiev, S.I., Nishiyama, Y., Takahashi, S., Miyairi, S., Suzuki, I. and Murata, N. (2005) Systematic analysis of the relation of electron transport and ATP synthesis to the photodamage and repair of photosystem II in Synechocystis. Plant Physiol., 137: 263-273.
• Nishiyama, Y., Allakhverdiev, S.I., Yamamoto, H., Hayashi, H. and Murata, N. (2004) Singlet oxygen inhibits the repair of photosystem II by suppressing the translation elongation of the D1 protein in Synechocystis sp. PCC 6803. Biochemistry, 43(35): 11321-11330.
• Yamauchi, S., Okuyama, H., Nishiyama, Y. and Hayashi, H. (2004) Gene structure and transcriptional regulation of dnaK and dnaJ genes from a psychrophilic bacterium, Colwellia maris. Extremophiles, 8(4): 283-290.
• Okuda, K., Nishiyama, Y., Morita, E.H., and Hayashi, H. (2004) Identification and characterization of NuhA, a novel Nudix hydrolase specific for ADP-ribose in the cyanobacterium Synechococcus sp. PCC 7002. Biochim. Biophys. Acta, 1699(1-2): 245-252.
• Kanervo, E., Spetea, C., Nishiyama, Y., Murata, N., Andersson, B. and Aro, E.-M. (2003) Dissecting a cyanobacterial proteolytic system: efficiency in inducing degradation of the D1 protein of photosystem II in cyanobacteria and plants. Biochim. Biophys. Acta, 1607: 131-140.
• Klimov, V.V., Allakhverdiev, S.I., Nishiyama, Y., Khorobrikh, A.A. and Murata, N. (2003) Stabilization of the oxygen-evolving complex of photosystem II by bicarbonate and glycinebetaine in thylakoid and subthylakoid preparations. Functional Plant Biol., 30: 797-803.
• Nishiyama, Y., Hardré-Linard, H., Miras, S., Miége, C., Block, M.A., Revah, F., Joyard, J. and Maréchal, E. (2003) Refolding from denatured inclusion bodies, purification to homogeneity and simplified assay of the plant chloroplast MGDG synthase from land plants. Protein Expr. Purif., 31: 79-87.
• Allakhverdiev, S.I., Hayashi, H., Nishiyama, Y., Ivanov, A.G., Aliev, J.A., Klimov, V.V., Murata, N. and Carpentier, R. (2003) Glycinebetaine protects the D1/D2/Cyt b559 complex of photosystem II against photo-induced and heat-induced inactivation. J. Plant Physiol., 160: 41-49.
• Allakhverdiev, S.I., Nishiyama, Y., Miyairi, S., Yamamoto, H., Inagaki, N., Kanesaki, Y. and Murata, N. (2002) Salt stress inhibits the repair of photodamaged photosystem II by suppressing the transcription and translation of psbA genes in Synechocystis. Plant Physiol., 130: 1443-1453.
• Kimura, A., Eaton-Rye, J.J., Morita, E.H., Nishiyama, Y. and Hayashi, H. (2002) Protection of the oxygen-evolving machinery by the extrinsic proteins of photosystem II is essential for development of cellular thermotolerance in Synechocystis sp. PCC 6803. Plant Cell Physiol., 43: 932-938.
• Ushimaru, T., Nishiyama, Y., Hayashi, H. and Murata, N. (2002) No coordinated transcriptional regulation of the sod-kat antioxidative system in Synechocystis sp. PCC 6803. J. Plant Physiol., 159: 805-807.
• Nishiyama, Y., Yamamoto, H., Allakhverdiev, S.I., Inaba, M., Yokota, A. and Murata, N. (2001) Oxidative stress inhibits the repair of photodamage to the photosynthetic machinery. EMBO J., 20: 5587-5594.
• Dilley, R.A., Nishiyama, Y., Gombos, Z. and Murata, N. (2001) Bioenergetic responses of Synechocystis 6803 fatty acid desaurase mutants at low temperature. J. Bioenerg. Biomembr., 33: 135-141.
• Tanaka, Y., Nishiyama, Y. and Murata, N. (2000) Acclimation of the photosynthetic machinery to high temperature in Chlamydomonas requires synthesis de novo of proteins encoded by the nuclear and chloroplast genomes. Plant Physiol., 124: 441-450.
• Allakhverdiev, S.I., Sakamoto, A., Nishiyama, Y., Inaba, M. and Murata, N. (2000) Ionic and osmotic effects of NaCl-induced inactivation of photosystems I and II in Synechococcus sp. Plant Physiol., 123: 1047-1056.
• Allakhverdiev, S.I., Sakamoto, A., Nishiyama, Y. and Murata, N. (2000) Inactivation of photosystem I and II in response to osmotic stress in Synechococcus: Contribution of water channels. Plant Physiol., 122: 1201-1208.
• Szalontai, B., Nishiyama, Y., Gombos, Z. and Murata, N. (2000) Membrane dynamics as seen by Fourier transform infrared spectroscopy in a cyanobacterium, Synechocystis. PCC 6803. The effects of lipid unsaturation and the protein to lipid ratio. Biochim. Biophys. Acta, 1509: 409-419.
• Nishiyama, Y., Los, D.A. and Murata, N. (1999) PsbU, a protein associated with photosystem II, is required for the acquisition of cellular thermotolerance in Synechococcus species PCC 7002. Plant Physiol. 120: 301-308.
• Allakhverdiev, S.I., Nishiyama, Y., Suzuki, I., Tasaka, Y. and Murata, N. (1999) Genetic engineering of the unsaturation of fatty acids in membrane lipids alters the tolerance of Synechocystis to salt stress. Proc. Natl. Acad. Sci. U.S.A. 96: 5862-5867.
• Sato, N., Ohshima, K., Watanabe, A., Ohta, N., Nishiyama, Y., Joyard, J. and Douce, R. (1998) Molecular characterization of the PEND protein, a novel bZip protein present in the envelope membrane that is the site of nucleoid replication in developing plastids. Plant Cell 10: 859-872.
• Sato, N., Maruyama, K., Nishiyama, Y. and Murata, N. (1997) Identification of a cold-regulated RNA-binding protein from the marine cyanobacterium Synechococcus sp. PCC 7002. J. Plant Res. 110: 405-410.
• Nishiyama, Y., Los, D.A., Hayashi, H. and Murata, N. (1997) Thermal protection of the oxygen-evolving machinery by PsbU, an extrinsic protein of photosystem II, in Synechococcus species PCC 7002. Plant Physiol. 115: 1473-1480.
• Deshnium, P., Gombos, Z., Nishiyama, Y. and Murata, N. (1997) The action in vivo of glycine betaine in enhancement of tolerance of Synechococcus sp. PCC 7942 to low temperature. J. Bacteriol. 179: 339-344.
• Tasaka, Y., Gombos, Z., Nishiyama, Y., Mohanty, P., Ohba, T., Ohki, K. and Murata, N. (1996) Targeted mutagenesis of acyl-lipid desaturases in Synechocystis: evidence for the important roles of polyunsaturated membrane lipids in growth, respiration and photosynthesis. EMBO J. 15: 6416-6425.
• Nishiyama, Y., Kitamura, M., Tamura, S. and Watanabe, T. (1994) Purification and substrate specificity of chlorophyllase from Chlorella regularis. Chem. Lett. 23(1): 69-72.
• Nishiyama, Y., Hayashi, H., Watanabe, T. and Murata, N. (1994) Photosynthetic oxygen evolution is stabilized by cytochrome c550 against heat inactivation in Synechococcus sp. PCC 7002. Plant Physiol. 105: 1313-1319.
• Nishiyama, Y., Kovács, E., Lee, C.B., Hayashi, H., Watanabe, T. and Murata, N. (1993) Photosynthetic adaptation to high temperature associated with thylakoid membranes of Synechococcus PCC7002. Plant Cell Physiol. 34: 337-343.
• Kojima, S., Nishiyama, Y., Kumagai, I. and Miura, K. (1991) Inhibition of subtilisin BPN' by reaction site P1 mutants of Streptomyces subtilisin inhibitor. J. Biochem. 109: 377-382.

PROCEEDINGS

• Kojima, K., Oshita, M., Hayashi, H., Nishiyama, Y. (2008) Role of elongation factor G in the inhibition of the synthesis of the D1 protein of photosystem II under oxidative stress. In Photosynthesis. Energy from the Sun: 14th International Congress on Photosynthesis, Springer, pp. 1319-1322.
• Morita, E.H., Wakamatsu, M., Kawamoto, S., Nishiyama, Y. and Hayashi, H. (2003) Studies on the protein-DNA complex formation between the cyanobacterial transcription factors, SmtB and its homologues, functioning as zinc-ion sensors and the recognition DNA sequences. Nucleic Acids Res. suppl., 3: 203-204.
• Nishiyama, Y., Yamamoto, H., Inaba, M., Yokota, A. and Murata, N. (2001) Inhibition by oxidative stress of the repair of photodamage to photosystem II. In Proceedings of the 12th International Congress on Photosynthesis (edited by C. Critchley), S9-P009. CSIRO Publishing, Melbourne, Australia.
• Nishiyama, Y., Los, D.A. and Murata, N. (1998) Role of PsbU, an extrinsic protein of photosystem II, in the acquisition of thermotolerance in Synechococcus sp. PCC 7002. In Photosynthesis: Mechanisms and Effects. Vol. IV (edited by G. Garab), pp. 2449-2452. Kluwer Academic Publishers, Dordrecht, The Netherlands.
• Hayashi, H., Nishida, I., Ishizaki-Nishizawa, O., Nishiyama, Y. and Murata, N. (1994) Genetically engineered modification of plant chilling sensitivity and characterization of cyanobacterial heat shock proteins. In Biochemical and Cellular Mechanisms of Stress Tolerance in Plants (edited by J. H. Cherry), pp. 543-555. Springer-Verlag, Berlin.
• Murata, N., Wada, H., Nishida, I., Gombos, Z., Nishiyama, Y., Hayashi, H., Sakamoto, T., Ishizaki-Nishizawa, O. and Higashi, S. (1992) The molecular basis for the acclimation of photosynthesis toward temperature. In Research in Photosynthesis. Vol. IV (edited by N. Murata), pp. 113-119. Kluwer Academic Publishers, Dordrecht, The Netherlands.
• Nishiyama, Y., Kovács, E., Hayashi, H., Watanabe, T. and Murata, N. (1992) The adaptation of photosynthesis to high temperature in Synechococcus PCC7002. In Research in Photosynthesis. Vol. IV (edited by N. Murata), pp. 137-140. Kluwer Academic Publishers, Dordrecht, The Netherlands.

BOOKS

• 光合成（2021）第III部1「光環境応答」、日本光合成学会編、朝倉書店、pp. 130-135（執筆分担）ISBN 978-4-254-17176-1
• 光合成事典（2003）日本光合成研究会編、学会出版センター（執筆分担）

OTHERS

• 井原宏蕗、湯浅光貴、西山佳孝、坂本香織、藤田祐一、寺内一姫、坂本敏夫 (2023) 陸棲藍藻Nostoc commune (イシクラゲ)を利用した複合材料の作製-「光合成をする紙」をつくる、光合成研究33(2): 63-70.
• 湯浅光貴、紫加田知幸、西山佳孝 (2020) 有害赤潮形成藻シャットネラ属における細胞外スーパーオキシド産生と光合成の関係、光合成研究30(3): 149-156.
• 紫加田知幸、湯浅光貴、西山佳孝 (2019) 赤潮藻類の光応答、光合成研究29(2): 147-155.
• 髙橋拓子、西山佳孝 (2018) 光合成におけるカロテノイドの機能、「カロテノイド：その多様性と普遍性が切り開く新展開」（篠村知子編集）、植物科学の最前線BSJ-Review 9: 50-62.
• 西山佳孝 (2013) 光化学系IIの光阻害：光損傷と修復阻害のメカニズム、光合成研究23(2): 50-56.
• 西山佳孝 (2004) 環境ストレスと光合成の修復、光合成研究39: 8-12.
• 西山佳孝 (2003) The 2nd Japan-Germany Binational Symposium、光合成研究37: 18-20.
• 奥田賢治、西山佳孝 (2002) 環境応答に関与する遺伝子の探索、愛媛大学機器分析センター報 17: 20- 24.

特許

• 山本哲史、西山佳孝、愛知真木子、高谷信之、小俣達男、池田和貴「遊離脂肪酸の分離方法および遊離脂肪酸生産微生物の培養方法」特許2024-042439、2024年3月18日出願
• 山本哲史、西山佳孝、門脇太朗、愛知真木子、高谷信之、小俣達男、池田和貴「遊離脂肪酸生産藻類とその製造方法、および脂肪酸製造方法」特許2024-020449、2024年2月14日出願
• 山本哲史、西山佳孝、門脇太朗、愛知真木子、高谷信之、小俣達男、池田和貴「非遺伝子組換え型の遊離脂肪酸生産藻類とその製造方法、および脂肪酸製造方法」特許2023-036698、2023年3月9日出願
• 山本哲史、西山佳孝、小俣達男「遊離脂肪酸の製造方法および遊離脂肪酸生産藻類」特許2023-037015、2023年3月10日出願
• 紫加田知幸、鬼塚剛、松永茂、西山佳孝、宮村和良「赤潮原因ラフィド藻の光逃避行動を誘導する方法」特許、2014-264782、2014年12月26日出願

メディア報道

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  埼玉大学HP研究トピックス 2023年11月21日
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  埼玉大学HP研究トピックス 2023年4月12日
• 大成建設ら、油を細胞外で生産する藻を作製　バイオ燃料製造コスト減に期待
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• 大成建設や埼玉大など、燃料物質である油を細胞外につくる微細藻類を開発 | TECH+（テックプラス）
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• 油成分放出の藻類、開発　抽出不要、何度も可能　大成建設など
  朝日新聞DIGITAL 2023年4月19日
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  読売新聞オンライン 2023年4月24日
• 藻類から燃料、CO2実質ゼロ　ちとせ研究所が大型施設
  日本経済新聞電子版 2023年6月15日
• 期待の次世代エネルギー!“藻類オイル”最前線
  NHK Eテレ「サイエンスZERO」出演 2023年9月10日
• 光合成は修復能力を上げて強光に耐える―光合成の強光耐性の新たな仕組みを解明―
  埼玉大学HP研究トピックス 2019年10月1日

受賞

• 第2回物質・デバイス共同研究賞「光合成のレドックス制御と環境応答の分子機構」（西山佳孝）物質デバイス領域共同研究拠点2020年8月21日
• 日本プランクトン学会・学生口頭発表賞（湯浅光貴）静岡市産学交流センター（静岡市）2019年9月21日
• 第10回日本光合成学会年会・ポスター賞（湯浅光貴）京都産業大学むすびわざ館（京都市）2019年5月26日