発表論文

2024年

  • Takahashi D., Soga K., Kikuchi T., Kutsuno T., Hao P., Sasaki K., Nishiyama Y., Sampathkumar A., Kidokoro S., Bacic A., Johnson K.L., Kotake T. (2024) Cell wall pectic β-1,4-galactan contributes to increased plant freezing tolerance induced by cold acclimation. Curr. Biol. 34, 958-968. (Abstract).
  • Kotake T., Takahashi D. (2024) On the separate metabolisms of UDP-sugars and GDP-sugars in plants. Trends Glycosci. Glycotechnol. 36, E1-E5. (Abstract).
  • Tokuyasu K., Yamagishi K., Kotake T., Kimura S., Ike M. (2024) Hydrogen chloride treatment of rice straw for upcycling into nanofibrous products for sugar pool. Biores. Technol. Rep. 25, 101717 (Abstract).
  • Umezawa A., Matsumoto M., Handa H., Nakazawa K., Miyagawa M., Seifert G.J., Takahashi D., Fushinobu S., Kotake T. (2024) Cytosolic UDP-L-arabinose synthesis by bifunctional UDP-glucose 4-epimerases in Arabidopsis. Plant J. in press.

2023年

  • Charrier G., Willick I.R., Takahashi D. (2023) Cross-disciplinary insights into the mechanisms of plant cold hardiness: From molecules to ecosystems. Physiol. Plant. 175: e13901. (Abstract).
  • Lonsdale A., Ceballos-Laita L., Takahashi D., Uemura M., Abadía J., Davis M.J., Bacic A., Doblin M.S. (2023) LSPpred Suite: Tools for Leaderless Secretory Protein Prediction in Plants. Plants (Basel). 12: 1428. (Abstract).
  • Yoshida H., Okada S., Wang F., Shiota S., Mori M., Kawamura M., Zhao X., Wang Y., Nishigaki N., Kobayashi A., Miura K., Yoshida S., Ikegami M., Ito A., Huang L.T., Caroline Hsing Y.I., Yamagata Y., Morinaka Y., Yamasaki M., Kotake T., Yamamoto E., Sun J., Hirano K., Matsuoka M. (2023) Integrated genome-wide differentiation and association analyses identify causal genes underlying breeding-selected grain quality traits in japonica rice. Mol. Plant 16, 1460-1477. (Abstract).
  • Kikukawa K., Takigawa-Imamura H., Soga K., Kotake T., Higaki T. (2023) Smooth elongation of pavement cells induced by RIC1 overexpression leads to marginal protrusions of the cotyledon in Arabidopsis thaliana. Plant Cell Physiol. 64,1356-1371. (Abstract).
  • Mukae K., Md. Sakil A., Kotake T., Inoue-Aono Y., Moriyasu Y. (2023) Autophagy accelerates cell death after desiccation and hydration stress in Physcomitrium. Environ. Exp. Bot. 213, 105412. (Abstract).
  • Takahashi H., Kono T., Sawada K., Kumano S., Tsuri Y., Maruyama M., Yoshimura M., Takahashi D., Kawamura Y., Uemura M., Nakabayashi S., Mori Y., Hosokawa Y., Yoshikawa H.Y. (2023) Spatiotemporal Control of Ice Crystallization in Supercooled Water via an Ultrashort Laser Impulse. J. Phys. Chem. Lett. 14: 4394-4402. (Abstract).
  • Kutsuno T., Chowhan S., Kotake T., Takahashi D. (2023) Temporal cell wall changes during cold acclimation and deacclimation and their potential involvement in freezing tolerance and growth. Physiol. Plant. 175, e13837. (Abstract).
  • Ghosh K., Takahashi D., Kotake T. (2023) Plant type II arabinogalactan: Structural features and modification to increase functionality. Carbohydr. Res. 529, 108828. (Abstract).
  • Oota M., Toyoda S., Kotake T., Wada N., Hashiguchi M., Akashi R., Ishikawa H., Favery B., Tsai A.Y., Sawa S. (2023) Rhamnogalacturonan-I as a nematode chemoattractant from Lotus corniculatus L. super-growing root culture. Front. Plant Sci. 13, 1008725. (Abstract).

2022年

  • Kikuchi A., Hara K., Yoshimi Y., Soga K., Takahashi D., Kotake T. (2022) In vivo structural modification of type II arabinogalactans with fungal endo-β-1, 6-galactanase in Arabidopsis. Front. Plant Sci. 13, 1010492. (Abstract).
  • Watanabe E., Kondo M., Kamal M.M., Uemura M., Takahashi D., Kawamura Y. (2022) Plasma membrane proteomic changes of Arabidopsis DRP1E during cold acclimation in association with the enhancement of freezing tolerance. Physiol. Plant. 174, e13820. (Abstract).
  • Oikawa K., Goto-Yamada S., Hayashi Y., Takahashi D., Kimori Y., Shibata M., Yoshimoto K., Takemiya A., Kondo M., Hikino K., Kato A., Shimoda K., Ueda H., Uemura M., Numata K., Ohsumi Y., Hara-Nishimura I., Mano S., Yamada K., Nishimura M. (2022) Pexophagy suppresses ROS-induced damage in leaf cells under high-intensity light. Nat. Commun. 13, 7493. (Abstract).
  • Sakil M.A., Mukae K., Funada R., Kotake T., Ueno S., Aktar M.M., Roni M.S., Inoue-Aono Y., Moriyasu Y. (2022) Amino acids supplied through the autophagy/endocytosis pathway promote starch synthesis in physcomitrella protonemal cells. Plants 11, 2157. (Abstract).
  • Miyagi A., Mori K., Ishikawa T., Ohkubo S., Adachi S., Yamaguchi M., Ookawa T., Kotake T., Kawai-Yamada M. (2022) Metabolomic analysis of rice brittle culm mutants reveals each mutant- specific metabolic pattern in each organ. Metabolomics 18, 95. (Abstract).
  • Teh O.K., Singh P., Ren J., Huang L.T., Ariyarathne M., Salamon B.P., Wang Y., Kotake T., Fujita T. (2022) Surface-localized glycoproteins act through class C ARFs to fine-tune gametophore initiation in Physcomitrium patens. Development 149, dev200370. (Abstract).
  • Ceballos-Laita L., Takahashi D., Uemura M., Abadía J., López-Millán A.F., Rodríguez-Celma J. (2022) Effects of Fe and Mn deficiencies on the root protein profiles of tomato (Solanum lycopersicum) using two-dimensional electrophoresis and label-free shotgun analyses. Int. J. Mol. Sci 28, 3719. (Abstract).

2021年

  • Ohtani M., Kotake T., Mortimer J.C., Demura T. (2021) The Mechanics and Biology of Plant Cell Walls: Resilience and Sustainability
    for Our Future Society. Plant Cell Physiol. 62, 1787-1790. (Abstract).
  • Takahashi D., Willick I.R., Kasuga J., Livingston Iii D.P. (2021) Responses of the Plant Cell Wall to Sub-Zero Temperatures:
    A Brief Update. Plant Cell Physiol. 62, 1858-1864. (Abstract).
  • Shikata T., Yuasa K., Kitatsuji S., Sakamoto S., Akita K., Fujinami Y., Nishiyama Y., Kotake T., Tanaka R., Yamasaki Y. (2021)
    Superoxide Production by the Red Tide-Producing Chattonella marina Complex (Raphidophyceae) Correlates with Toxicity
    to Aquacultured Fishes. Antioxidants (Basel) 10, 1635. (Abstract).
  • Nishigaki N., Yoshimi Y., Kuki H., Kunieda T., Hara-Nishimura I., Tsumuraya Y., Takahashi D., Dupree P., Kotake T. (2021)
    Galactoglucomannan structure of Arabidopsis seed-coat mucilage in GDP-mannose synthesis impaired mutants.
    Physiol. Plant. 173, 1244-12529. (Abstract).
  • Tsai A.Y., Iwamoto Y., Tsumuraya Y., Oota M., Konishi T., Ito S., Kotake T., Ishikawa H., Sawa S. (2021) Root-knot nematode
    chemotaxis is positively regulated by l-galactose sidechains of mucilage carbohydrate rhamnogalacturonan-I.
    Sci. Adv. 4, eabh4182 (Abstract).
  • Kondo T., Kichijo M., Nakaya M., Takenaka S., Arakawa T., Kotake T., Fushinobu S., Sakamoto T. (2021) Biochemical and structural
    characterization of a novel 4-O-α-l-rhamnosyl-β-d-glucuronidase from Fusarium oxysporum. FEBS J. 288, 4918-4938 (Abstract).
  • Cao et al. (2021) Wolfberry genomes and the evolution of Lycium (Solanaceae). Commun. Biol. 4, 671 (Abstract).
  • Xuan L., Zhang J., Lu W., Gluza P., Ebert B., Kotake T., Lu M., Zhang Y., Clausen M.H., Johnson K.L., Doblin M.S., Heazlewood J.L.,
    Bacic A., Song L., Zeng W.     (2021) A Pipeline towards the Biochemical Characterization of the Arabidopsis GT14 Family.
    Int. J. Mol. Sci. 22, 1360 (Abstract).

2020年

  • Li B., Takahashi D., Kawamura Y., Uemura M. (2020) Plasma membrane proteome analyses of Arabidopsis thaliana
    suspension-cultured cells during cold acclimation or ABA treatment: relationship with freezing tolerance and growth phase.
    J. Proteomics 211, 103528. (Abstract).
  • Wakabayashi, K., Soga K., Hoson T., Kotake T., Yamazaki T., Higashibata A., Ishioka N., Shimazu T., Kamada, M. (2020) Microgravity
    affects the level of matrix polysaccharide 1,3:1,4-β-glucans in cell walls of rice shoots by increasing the expression level of a gene
    involved in their breakdown. Astrobiology 20, 820-829. (Abstract).
  • Yoshimi Y., Hara K., Yoshimura M., Tanaka N.,Higaki T., Tsumuraya Y., Kotake T. (2020) Expresion of a fungal exo-β-1,3-galactanase
    in Arabidopsis reveals a role of type II arabinogalactans in the regulation of cell shape. J. Exp. Bot. 71, 5414-5424. (Abstract).
  • Lopez-Hernandez F., Tryfona T., Rizza A., Yu X., Harris M.O., Web A.A.R., Kotake T., Dupree P. (2020) Calcium binding by
    arabinogalactan polysaccharides is important for normal plant development. Plant Cell 32, 3346-3369. (Abstract).
  • Ceballos-Laita L., Gutierrez-Carbonell E., Takahashi D., Lonsdale A., Abadía A., Doblin M.S., Bacic A., Uemura M., Abadía J.,
    López-Millán A.F.     (2020) Effects of excess manganese on the xylem sap protein profile of tomato (Solanum lycopersicum) as revealed
    by shotgun proteomic analysis. Int. J. Mol. Sci. 21, 8863 (Abstract).
  • Takahashi D., Johnson K., Hao P., Tuong T., Erban A., Sampathkumar A., Bacic A., Livingston D.P. 3rd, Kopka J., Kuroha T., Yokoyama R.,
    Nishitani K., Zuther E., Hincha D.K.     (2020) Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences
    freezing tolerance after cold and sub-zero acclimation. Plant Cell Environ. 44, 915-930.(Abstract).
  • Matsuyama K., Kishine N., Fujimoto Z., Sunagawa N., Kotake T., Tsumuraya Y., Samejima M., Igarashi K., Kaneko S. (2020)
    Unique active site and subsite features in the arabinogalactan-degrading GH43 exo-β-1,3-galactanase from Phanerochaete
    chrysosporium. J. Biol. Chem. 295, 18539-18552 (Abstract).
  • Ito K., Fukuoka K., Nishigaki N., Hara K., Yoshimi Y., Kuki H., Takahashi D., Tsumuraya Y., Kotake T. (2020) Structural features
    conserved in subclass of type II arabinogalactan. Plant Biotechnol. 37, 459-463 (Abstract).
  • Kamal M.M., Takahashi D., Nakayama T., Miki Y., Kawamura Y., Uemura M. (2020) Proteomic approaches to identify cold-regulated plasma membrane proteins. Methods Mol. Biol. 2156, 255-268 (Abstract).
  • Takahashi D., Zuther E., Hincha DK. (2020) Analysis of changes in plant cell wall composition and structure during cold acclimation. Methods Mol. Biol. 2156, 171-186 (Abstract).
  • Takahashi D., Li B., Nakayama T., Kawamura Y., Uemura M. (2020) Shotgun proteomics of plant plasma membrane and microdomain proteins using nano-LC-MS/MS. Methods Mol. Biol. 2139, 89-106 (Abstract).

2019年

  • Tsumuraya Y., Ozeki E., Ooki Y., Yoshimi Y., Hashizume K., Kotake T. (2019) Properties of arabinogalactan-proteins in European pear
    (Pyrus communis L.) fruits. Carbohydr. Res. 485, 107816. (Abstract).
  • Fujita K., Sakamoto A., Kaneko S., Kotake T., Tsumuraya Y., Kitahara K. (2019) Degradative enzymes for type II arabinogalactan side
    chains in Bifidobacterium longum subsp. longum. Appl. Microbiol. Biotechnol. 103, 1299-1310. (Abstract).

2018年

  • Yu L., Lyczakowski J.J., Pereira C.S., Kotake T., Yu X., Li A., Møgelsvang S., Skaf M.S., Dupree P. (2018) The patterned structure of
    galactoglucomannan synthesized by CSLA2 and MAGT1 suggests it may bind to cellulose. Plant Physiol. 178, 1011-1026. (Abstract).
  • Sato K., Hara K., Yoshimi K., Kitazawa K., Ito H., Tsumuraya Y., Kotake T. (2018) Yariv reactivity of type II arabinogalactan from larch
    wood. Carbohydr. Res. 467, 8-13. (Abstract).
  • Soga K., Yamazaki C., Kamada M., Tanigawa N., Kasahara H., Yano S., Kojo K.H., Kutsuna N., Kato T., Hashimoto T., Kotake T.,
    Wakabayashi K., Hoson T.     (2018) Modification of growth anisotropy and cortical microtubule dynamics in Arabidopsis hypocotyls
    grown under microgravity conditions in space. Physiol. Plant. 162, 135-144. (Abstract).

2017年

  • Yoshimi Y., Yaguchi K., Kaneko S., Tsumuraya Y., Kotake T. (2017) Properties of fungal endo-β-1,3-galactanases and their synergistic action on arabinogalactan-proteins with an exo-β-1,3-galactanase. Carbohydr. Res. 453-454, 26-35. (Abstract).
  • Ruprecht C., Bartetzko M.P., Senf D., Dallabernadina P., Andersen M.C.F., Kotake T., Knox J.P., Hahn M.G., Clausen M.H., Pfrengle F. (2017) A synthetic glycan microarray enables epitope mapping of plant cell wall glycan-directed antibodies. Plant Physiol. 175, 1094-1104. (Abstract).
  • Imaizumi C., Tomatsu H., Kitazawa K., Yoshimi Y., Shibano S., Kikuchi K., Yamaguchi M., Kaneko S., Tsumuraya Y., Kotake T. (2017) Heterologous expression and characterization of an Arabidopsis β-L-arabinopyranosidase and α-D-galactosidases acting on β-L-arabinopyranosyl residues. J. Exp. Bot. 68, 4651-4661 129, 781-792. (Abstract).
  • Wakabayashi K., Soga K., Hoson T., Kotake T., Kojima M., Sakakibara H., Sakakibara H., Yamazaki T., Higashibata A., Ishioka N., Shimazu T., Kamada M. (2017) Persistence of plant hormone levels in rice shoots grown under microgravity conditions in space: Its relationship to maintenance of shoot growth. Physiol. Plant. 161, 285-293. (Abstract).
  • Hirano K., Matsuda R., Takase W., Morinaka Y., Kawamura M., Takeuchi Y., Takagi H., Yaegashi H., Natsume S., Terauchi R., Kotake T., Matsuoka M., Sazuka T. (2017) Screening of rice mutants with improved saccharification efficiency results in the identification of CONSTITUTIVE PHOTOMORPHOGENIC 1 and GOLD HULL AND INTERNODE 1. Planta 246, 61-74. (Abstract).
  • Yoshimi Y., Sugawara Y., Hori C., Igarashi K., Kaneko S., Tsumuraya Y., Kotake T. (2017) A protease/peptidase from culture medium of Flammulina velutipes that acts on arabinogalactan-protein. Biosci. Biotechnol. Biochem. 81, 475-481. (Abstract).

2016年

  • Mizukami A.G., Inatsugi R., Jiao J., Kotake T., Kuwata K., Ootani K., Okuda S., Sankaranarayanan S., Satoo Y., Maruyama D., Iwai H.,
    Garénaux E., Sato C., Kitajima K., Tsumuraya Y., Mori H., Yamaguchi J., Itami K., Sasaki N., and Higashiyama T.     (2016) The AMOR sarabinogalactan sugar chain induces pollen-tube competency to respond to ovular guidance Curr. Biol. 26, 1091-1097 (Abstract).
  • Ookawa T., Aoba R., Yamamoto T., Ueda T., Takai T., Fukuoka S., AndoT., Adachi S., Matsuoka S., Ebitani T., Kato Y., Mulsanti I.W.,
    Kishii M., Reynolds M., PiñeraF., Kotake T., Kawasaki S., Motobayashi T., and Hirasawa T.     (2016) Precise estimation of genome regions controlling lodging resistance using a set of reciprocal chromosome segment substitution lines in rice. Sci. Rep. 6, 30572 (Abstract).
  • Kotake T., Yamanashi Y., Imaizumi C., Tsumuraya Y. (2016) Metabolism of L-arabinose in plants. J. Plant Res. 129, 781-792. (Abstract).
  • Murakami M., Soga K., Kotake T., Kato T., Hashimoto T., Wakabayashi1 K., Hoson T. Roles of MAP65-1 and BPP1 in gravity resistance of Arabidopsis hypocotyls. Biol. Sci. Space, 30, 1-7.(PDF).

2015年

  • Miyamoto K., Kotake T., Jarecka A.B., Saniewski M., Ueda J. (2015) Hormonal regulation of gummosis and composition of gums from bulbs of hyacinth (Hyacinthus orientalis). J. Plant Physiol. 174, 1-4. (Abstract).
  • Inaba M., Maruyama T., Yoshimi Y., Kotake T., Matsuoka K., Koyama T., Tryfona T., Dupree P., Tsumuraya Y. (2015) L-Fucose-
    containing arabinogalactan-protein in radish leaves. Carbohydr. Res. 415, 1-11. (Abstract).
  • Wakabayashi K., Soga K., Hoson T., Kotake T., Yamazaki T., Higashibata A., Ishioka N., Shimazu T., Fukui K., Osada I., Kasahara H.,
    Kamada M.     (2015) Suppression of Hydroxycinnamate network formation in cell walls of rice shoots grown under microgravity conditions in space. PLoS One 10, e0137992. (Abstract).
  • Kuge T., Nagoya H., Tryfona T., Kurokawa T., Yoshimi Y., Dohmae N., Tsubaki K., Dupree P., Tsumuraya Y., Kotake T. (2015) Action of
    an endo-beta-1,3(4)-glucanase on cellobiosyl unit structure in barley beta-1,3:1,4-glucan. Biosci. Biotechnol. Biochem. 79, 1810-1817.
    (Abstract).
  • Sawake S., Tajima N., Mortimer J.C., Ishikawa T., Yu X., Yamanashi Y., Yoshimi Y., Kawai-Yamada M., Dupree P., Tsumuraya Y., Kotake T. (2015) KONJAC1 and 2 are key factors for GDP-mannose generation and affect L-ascorbic acid and glucomannan biosynthesis in Arabidopsis. Plant Cell 27, 3397-3409. (Abstract).

2014年

  • Shimoda R., Okabe K., Kotake T., Matsuoka K., Koyama T., Tryfona T., Liang H.-C., Dupree P., Tsumuraya Y. (2014) Enzymatic
    fragmentation of carbohydrate moieties of radish arabinogalactan-protein and elucidation of the structures. Biosci. Biotechnol. Biochem. 78, 418-431 (Abstract).
  • Eda M., Ishimaru M., Tada T., Sakamoto T., Kotake T., Tsumuraya Y., Mort AJ., Gross K.C. (2014) Enzymatic activity and substrate
    specificity of the recombinant tomato β-galactosidase 1. J. Plant Physiol. 171, 1454-1460. (Abstract).

2013年

  • Kitazawa K., Tryfona T., Yoshimi Y., Hayashi Y., Kawauchi S., Antonov L., Tanaka H., Takahashi T., Kaneko S., Dupree P., Tsumuraya Y. and Kotake T.(2013) beta-Galactosyl Yariv reagent binds to the beta-1,3-galactan of arabinogalactan-proteins. Plant Physiol. 161, 1117-1126 (Abstract).
  • Geshi N., Johansen J.N., Dilokpimol A., Rolland A., Belcram K., Verger S., Kotake T., Tsumuraya Y., Kaneko S., Tryfona T., Dupree P., Scheller H.V., Höfte H., and Mouille G. (2013) A galactosyltransferase acting on arabinogalactan protein glycans is essential for embryo development in Arabidopsis. Plant J. 76, 126-138(Abstract).
  • Knoch E., Dilokpimol A., Tryfona T., Poulsen C., Xiong G., Harholt J., Petersen B., Ulvskov P., Hadi M., Kotake T., Tsumuraya Y., Pauly M., Dupree P., Geshi N.(2013) A β-glucuronosyltransferase from Arabidopsis thaliana involved in biosynthesis of type II arabinogalactan has a role in cell elongation during seedling growth. Plant J. 76, 1016-1029(Abstract).
  • Endo M., Kotake T., Watanabe Y., Kimura K. and Tsumuraya Y. (2013) Biosynthesis of the carbohydrate moieties of arabinogalactan-proteins by membrane-bound b-glucuronosyltransferases from radish primary roots. Planta 238, 1157-1169 (Abstract).
  • Kotake T., Hamamoto S., Saito T., Ohnishi J., Komatsu T., Tsumuraya Y. (2013) Characterization of alkali-soluble polysaccharides in deep subsoil layers. Soil Sci. Plant Nutr. 59, 871-876(Abstract).
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